IGV

Integrative Genomics Viewer

For Developers
Use igv.js to embed an interactive genome visualization component in your web app.
Extension for Jupyter Notebook which integrates igv.js

All IGV software is open source - MIT License.
GitHub repos:   IGV Desktop  |  IGV Web App  |  igv.js  |  igv-jupyter  |  Juicebox Web

Citing IGV

To cite your use of IGV in your publication, please reference one or more of:

James T. Robinson, Helga Thorvaldsdóttir, Wendy Winckler, Mitchell Guttman, Eric S. Lander, Gad Getz, Jill P. Mesirov. Integrative Genomics Viewer. Nature Biotechnology 29, 24–26 (2011)

Helga Thorvaldsdóttir, James T. Robinson, Jill P. Mesirov. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Briefings in Bioinformatics 14, 178-192 (2013).

James T. Robinson, Helga Thorvaldsdóttir, Aaron M. Wenger, Ahmet Zehir, Jill P. Mesirov. Variant Review with the Integrative Genomics Viewer (IGV). Cancer Research 77(21) 31-34 (2017)

James T. Robinson, Helga Thorvaldsdóttir, Douglass Turner, Jill P. Mesirov. igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV). bioRxiv 2020.05.03075499.

Contact Us

The IGV Team is based at UC San Diego and the Broad Institute of MIT and Harvard. The best way to reach us for support questions, bug reports, feature requests, and suggestions is by posting to the igv-help forum or by creating new issues in our GitHub repositories. To reach us privately on other topics not related to general support, feel free to email us directly.

Funding

IGV development has been supported by funding from the National Cancer Institute (NCI)  of the National Institutes of Health, the Informatics Technology for Cancer Reserarch (ITCR) of the NCI, and the Starr Cancer Consortium.